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TEL. 054-238-4926

〒422-8529 静岡県静岡市駿河区大谷836

静岡大学 グリーン科学技術研究所 研究支援室 ゲノム機能解析部
Functional Genomics Section, Instrumental Research Support Office,  Research Institute of Green Science and Technology

次世代シーケンス受託解析

次世代シーケンサーを用いた研究成果の論文リスト


  2017年度

  1. Tanaka Y, Suzuki T, Kurokura T, Iigo M, Toyama F, Habu N, Dohra H and Konno N. The complete genome sequence and phylogenetic analysis of the mitochondrial DNA of the wood-decaying fungus Fomitopsis palustris. Genes & Genomics, 39(12):1377-85. doi: 10.1007/s13258-017-0603-y (2017).
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  2. Suparmin A, Kato T, Dohra H and Park EY. Insight into cordycepin biosynthesis of Cordyceps militaris: Comparison between a liquid surface culture and a submerged culture through transcriptomic analysis. PLoS One, 12(11):e0187052. doi: 10.1371/journal.pone.0187052 (2017).
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  3. Choi JH, Sugiura H, Moriuchi R, Kawagishi H and Dohra H. High-Quality Draft Genome Sequence of Burkholderia contaminans CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound. Genome Announc, 5(41). doi: 10.1128/genomeA.01148-17 (2017).
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  4. Dohra H, Miyake Y and Kodani S. Draft Genome Sequence of Streptomyces olivochromogenes NBRC 3561, a Bioactive Peptide-Producing Actinobacterium. Genome Announc, 5(39). doi: 10.1128/genomeA.01048-17 (2017).
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  5. Ramphul C, Casareto BE, Dohra H, Suzuki T, Yoshimatsu K, Yoshinaga K and Suzuki Y. Genome analysis of three novel lytic Vibrio coralliilyticus phages isolated from seawater, Okinawa, Japan. Mar Genomics. doi: 10.1016/j.margen.2017.06.005 (2017).
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    2016年度

  6. Tsujino S, Uematsu C, Dohra H and Fujiwara T. Pyruvic oxime dioxygenase from heterotrophic nitrifier Alcaligenes faecalis is a nonheme Fe(II)-dependent enzyme homologous to class II aldolase. Sci Rep, 7:39991. doi: 10.1038/srep39991 (2017).
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  7. Kodani S, Inoue Y, Suzuki M, Dohra H, Suzuki T, Hemmi H and Ohnishi-Kameyama M. Sphaericin, a new lasso peptide from a rare actinomycete Planomonospora sphaerica. European Journal of Organic Chemistry. doi: 10.1002/ejoc.201601334 (2016).
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  8. Suzuki T, Yamamoto N, Choi JH, Takano T, Sasaki Y, Terashima Y, Ito A, Dohra H, Hirai H, Nakamura Y, Yano K and Kawagishi H. The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. Sci Rep, 6:39087. doi: 10.1038/srep39087 (2016).
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  9. Wang J, Suzuki T, Dohra H, Takigami S, Kako H, Soga A, Kamei I, Mori T, Kawagishi H and Hirai H. Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq. BMC Genomics, 17(1):616. doi: 10.1186/s12864-016-2977-7 (2016).
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  10. Suzuki K, Suzuki T, Nakatsuka T, Dohra H, Yamagishi M, Matsuyama K and Matsuura H. RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.). BMC Genomics, 17(1):611. doi: 10.1186/s12864-016-2995-5 (2016).
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  11. Dohra H, Suzuki T, Inoue Y and Kodani S. Draft Genome Sequence of Planomonospora sphaerica JCM9374, a Rare Actinomycete. Genome Announc, 4(4). doi: 10.1128/genomeA.00779-16 (2016).
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  12. Muraguchi Y, Kushimoto K, Ohtsubo Y, Suzuki T, Dohra H, Kimbara K and Shintani M. Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake. Genome Announc, 4(3). doi: 10.1128/genomeA.00347-16 (2016).
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  13. Hirata H, Kashihara M, Horiike T, Suzuki T, Dohra H, Netsu O and Tsuyumu S. Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms. Genome Announc, 4(2). doi: 10.1128/genomeA.01625-15 (2016).
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    2015年度

  14. Matsuzaki M, Mizushima S, Hiyama G, Hirohashi N, Shiba K, Inaba K, Suzuki T, Dohra H, Ohnishi T, Sato Y, Kohsaka T, Ichikawa Y, Atsumi Y, Yoshimura T and Sasanami T. Lactic acid is a sperm motility inactivation factor in the sperm storage tubules. Sci Rep, 5:17643. doi: 10.1038/srep17643 (2015).
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  15. Dohra H, Fujishima M and Suzuki H. Analysis of amino acid and codon usage in Paramecium bursaria. FEBS Lett, 589(20 Pt B):3113-8. doi: 10.1016/j.febslet.2015.08.033 (2015).
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  16. Suzuki T, Takeshima Y, Mikamoto T, Saeki JD, Kato T, Park EY, Kawagishi H and Dohra H. Genome Sequence of a Novel Iflavirus from mRNA Sequencing of the Pupa of Bombyx mori Inoculated with Cordyceps militaris. Genome Announc, 3(5). doi: 10.1128/genomeA.01039-15 (2015).
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    2014年度

  17. Yamamoto N, Suzuki T, Kobayashi M, Dohra H, Sasaki Y, Hirai H, Yokoyama K, Kawagishi H and Yano K. A-WINGS: an integrated genome database for Pleurocybella porrigens (Angel's wing oyster mushroom, Sugihiratake). BMC Res Notes, 7:866. doi: 10.1186/1756-0500-7-866 (2014).
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  18. Dohra H, Tanaka K, Suzuki T, Fujishima M and Suzuki H. Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum. FEMS Microbiol Lett, 359(1):16-8. doi: 10.1111/1574-6968.12577 (2014).
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  19. Kodama Y, Suzuki H, Dohra H, Sugii M, Kitazume T, Yamaguchi K, Shigenobu S and Fujishima M. Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts. BMC Genomics, 15:183. doi: 10.1186/1471-2164-15-183 (2014).
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    2013年度

  20. Dohra H, Suzuki H, Suzuki T, Tanaka K, Fujishima M. Draft Genome Sequence of Holospora undulata Strain HU1, a Micronucleus-Specific Symbiont of the Ciliate Paramecium caudatum. Genome Announcements 2013, 1(4): pii: e00664-13. doi:10.1128/genomeA.00664-13 (2013).
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  21. Suzuki T, Igarashi K, Dohra H, Someya T, Takano T, Harada K, Omae S, Hirai H, Yano K and Kawagishi H. A new omics data resource of Pleurocybella porrigens for gene discovery. PLoS One, 8(7):e69681. doi: 10.1371/journal.pone.0069681 (2013).
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国立大学法人 静岡大学
遺伝子実験棟
Gene Research laboratory of Shizuoka University

〒422-8529
静岡県静岡市駿河区大谷836
836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan

TEL 054-238-4926
FAX 054-238-4926