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TEL. 054-238-4926

〒422-8529 静岡県静岡市駿河区大谷836

静岡大学 グリーン科学技術研究所 研究支援室 ゲノム機能解析部
Functional Genomics Section, Instrumental Research Support Office,  Research Institute of Green Science and Technology

次世代シーケンス受託解析

次世代シーケンサーを用いた研究成果の論文リスト


  2018年度

1.    Moriuchi, R., Dohra, H., Kanesaki, Y., and Ogawa, N. Complete Genome Sequence of 3-Chlorobenzoate-Degrading Bacterium Cupriavidus necator NH9 and Reclassification of the Strains of the Genera Cupriavidus and Ralstonia Based on Phylogenetic and Whole-Genome Sequence Analyses. Front. Microbiol. 10, doi:10.3389/fmicb.2019.00133 (2019).
[Link]

2.    Dohra, H., Kaweewan, I., Casareto, B. E., Suzuki, Y., and Kodani, S. Draft Genome Sequence of Streptomyces spongiicola Strain 531S, an Actinobacterium Isolated from Marine Sediment. Microbiol. Resour. Announc. 8, doi:10.1128/MRA.01198-18 (2019).
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3.    Suzuki, T., Ono, A., Choi, J. H., Wu, J., Kawagishi, H., and Dohra, H. The complete mitochondrial genome sequence of the edible mushroom Stropharia rugosoannulata (Strophariaceae, Basidiomycota). Mitochondrial DNA Part B 4, 570-572, doi:10.1080/23802359.2018.1558120 (2019).
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4.    Toyotome, T., Hamada, S., Yamaguchi, S., Takahashi, H., Kondoh, D., Takino, M., Kanesaki, Y., and Kamei, K. Comparative genome analysis of Aspergillus flavus clinically isolated in Japan. DNA Res., doi:10.1093/dnares/dsy041 (2018).
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5.    Yanagiya, K., Maejima, Y., Nakata, H., Tokuda, M., Moriuchi, R., Dohra, H., Inoue, K., Ohkuma, M., Kimbara, K., and Shintani, M. Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure. Front. Microbiol. 9, 2602, doi:10.3389/fmicb.2018.02602 (2018).
[Link]  

6.    Suzuki, K., Aziz, F. A. A., Honjo, M., Nishimura, T., Masuda, K., Minoura, A., Kudo, Y., Moriuchi, R., Dohra, H., Tashiro, Y., and Futamata, H. Draft Genome Sequence of the Phenol-Degrading Bacterium Cupriavidus sp. Strain P-10, Isolated from Trichloroethene-Contaminated Aquifer Soil. Microbiol. Resour. Announc. 7, doi:10.1128/MRA.01009-18 (2018).
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7.    Tanaka, Y., Suzuki, T., Nakamura, L., Nakamura, M., Ebihara, S., Kurokura, T., Iigo, M., Dohra, H., Habu, N., and Konno, N. A GH family 28 endo-polygalacturonase from the brown-rot fungus Fomitopsis palustris: Purification, gene cloning, enzymatic characterization and effects of oxalate. Int. J. Biol. Macromol., doi:10.1016/j.ijbiomac.2018.11.004 (2018).
[Link]

8.    Ogura, M., and Kanesaki, Y. Newly Identified Nucleoid-Associated-Like Protein YlxR Regulates Metabolic Gene Expression in Bacillus subtilis. mSphere 3, doi:10.1128/mSphere.00501-18 (2018).
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9.    Kodani, S., Komaki, H., Hemmi, H., Miyake, Y., Kaweewan, I., and Dohra, H. Streptopeptolin, a Cyanopeptolin-Type Peptide from Streptomyces olivochromogenes. ACS Omega 3, 8104-8110, doi:10.1021/acsomega.8b01042 (2018).
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10. Kobayashi-Kirschvink, K. J., Nakaoka, H., Oda, A., Kamei, K. F., Nosho, K., Fukushima, H., Kanesaki, Y., Yajima, S., Masaki, H., Ohta, K., and Wakamoto, Y. Linear Regression Links Transcriptomic Data and Cellular Raman Spectra. Cell Syst. 7, 104-117 e104, doi:10.1016/j.cels.2018.05.015 (2018).
[Link]  

11. Uchiyama, H., Iwai, A., Dohra, H., Ohnishi, T., Kato, T., and Park, E. Y. The effects of gene disruption of Kre6-like proteins on the phenotype of beta-glucan-producing Aureobasidium pullulans. Appl. Microbiol. Biotechnol., doi:10.1007/s00253-018-8947-z (2018).
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12. Kanesaki, Y., Kubota, E., Ohtake, R., Higashi, Y., Nagaoka, J., Suzuki, T., and Akuzawa, S. Draft Genome Sequence of Bacillus licheniformis Heshi-B2, Isolated from Fermented Rice Bran in a Japanese Fermented Seafood Dish. Genome Announc. 6, doi:10.1128/genomeA.00118-18 (2018).
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13. Kanesaki, Y., Hirose, M., Hirose, Y., Fujisawa, T., Nakamura, Y., Watanabe, S., Matsunaga, S., Uchida, H., and Murakami, A. Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta. Genome Announc. 6, doi:10.1128/genomeA.00021-18 (2018).
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  2017年度

14. Tanaka, Y., Suzuki, T., Kurokura, T., Iigo, M., Toyama, F., Habu, N., Dohra, H., and Konno, N. The complete genome sequence and phylogenetic analysis of the mitochondrial DNA of the wood-decaying fungus Fomitopsis palustris. Genes Genomics 39, 1377-1385, doi:10.1007/s13258-017-0603-y (2017).
[Link]

15. Suparmin, A., Kato, T., Dohra, H., and Park, E. Y. Insight into cordycepin biosynthesis of Cordyceps militaris: Comparison between a liquid surface culture and a submerged culture through transcriptomic analysis. PLoS One 12, e0187052, doi:10.1371/journal.pone.0187052 (2017).
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16. Choi, J. H., Sugiura, H., Moriuchi, R., Kawagishi, H., and Dohra, H. High-Quality Draft Genome Sequence of Burkholderia contaminans CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound. Genome Announc. 5, doi:10.1128/genomeA.01148-17 (2017).
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17.  Dohra, H., Miyake, Y., and Kodani, S. Draft Genome Sequence of Streptomyces olivochromogenes NBRC 3561, a Bioactive Peptide-Producing Actinobacterium. Genome Announc. 5, doi:10.1128/genomeA.01048-17 (2017).
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18. Ramphul, C., Casareto, B. E., Dohra, H., Suzuki, T., Yoshimatsu, K., Yoshinaga, K., and Suzuki, Y. Genome analysis of three novel lytic Vibrio coralliilyticus phages isolated from seawater, Okinawa, Japan. Mar. Genomics, doi:10.1016/j.margen.2017.06.005 (2017).
[Link]

19.  Kodani, S., Inoue, Y., Suzuki, M., Dohra, H., Suzuki, T., Hemmi, H., and Ohnishi-Kameyama, M. Sphaericin, a Lasso Peptide from the Rare Actinomycete Planomonospora sphaerica. European J. Org. Chem. 2017, 1177-1183, doi:10.1002/ejoc.201601334 (2017).
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2016年度

20. Tsujino, S., Uematsu, C., Dohra, H., and Fujiwara, T. Pyruvic oxime dioxygenase from heterotrophic nitrifier Alcaligenes faecalis is a nonheme Fe(II)-dependent enzyme homologous to class II aldolase. Sci. Rep. 7, 39991, doi:10.1038/srep39991 (2017).
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21. Suzuki, T., Yamamoto, N., Choi, J. H., Takano, T., Sasaki, Y., Terashima, Y., Ito, A., Dohra, H., Hirai, H., Nakamura, Y., Yano, K., and Kawagishi, H. The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. Sci. Rep. 6, 39087, doi:10.1038/srep39087 (2016).
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22. Wang, J., Suzuki, T., Dohra, H., Takigami, S., Kako, H., Soga, A., Kamei, I., Mori, T., Kawagishi, H., and Hirai, H. Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq. BMC Genomics 17, 616, doi:10.1186/s12864-016-2977-7 (2016).
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23. Suzuki, K., Suzuki, T., Nakatsuka, T., Dohra, H., Yamagishi, M., Matsuyama, K., and Matsuura, H. RNA-seq-based evaluation of bicolor tepal pigmentation in Asiatic hybrid lilies (Lilium spp.). BMC Genomics 17, 611, doi:10.1186/s12864-016-2995-5 (2016).
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24. Dohra, H., Suzuki, T., Inoue, Y., and Kodani, S. Draft Genome Sequence of Planomonospora sphaerica JCM9374, a Rare Actinomycete. Genome Announc. 4, doi:10.1128/genomeA.00779-16 (2016).
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25. Muraguchi, Y., Kushimoto, K., Ohtsubo, Y., Suzuki, T., Dohra, H., Kimbara, K., and Shintani, M. Complete Genome Sequence of Algoriphagus sp. Strain M8-2, Isolated from a Brackish Lake. Genome Announc. 4, doi:10.1128/genomeA.00347-16 (2016).
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26. Hirata, H., Kashihara, M., Horiike, T., Suzuki, T., Dohra, H., Netsu, O., and Tsuyumu, S. Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms. Genome Announc. 4, doi:10.1128/genomeA.01625-15 (2016).
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2015年度

27. Matsuzaki, M., Mizushima, S., Hiyama, G., Hirohashi, N., Shiba, K., Inaba, K., Suzuki, T., Dohra, H., Ohnishi, T., Sato, Y., Kohsaka, T., Ichikawa, Y., Atsumi, Y., Yoshimura, T., and Sasanami, T. Lactic acid is a sperm motility inactivation factor in the sperm storage tubules. Sci. Rep. 5, 17643, doi:10.1038/srep17643 (2015).
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28. Dohra, H., Fujishima, M., and Suzuki, H. Analysis of amino acid and codon usage in Paramecium bursaria. FEBS Lett. 589, 3113-3118, doi:10.1016/j.febslet.2015.08.033 (2015).
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29. Suzuki, T., Takeshima, Y., Mikamoto, T., Saeki, J. D., Kato, T., Park, E. Y., Kawagishi, H., and Dohra, H. Genome Sequence of a Novel Iflavirus from mRNA Sequencing of the Pupa of Bombyx mori Inoculated with Cordyceps militaris. Genome Announc. 3, doi:10.1128/genomeA.01039-15 (2015).
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2014年度

30. Yamamoto, N., Suzuki, T., Kobayashi, M., Dohra, H., Sasaki, Y., Hirai, H., Yokoyama, K., Kawagishi, H., and Yano, K. A-WINGS: an integrated genome database for Pleurocybella porrigens (Angel's wing oyster mushroom, Sugihiratake). BMC Res. Notes 7, 866, doi:10.1186/1756-0500-7-866 (2014).
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31. Dohra, H., Tanaka, K., Suzuki, T., Fujishima, M., and Suzuki, H. Draft genome sequences of three Holospora species (Holospora obtusa, Holospora undulata, and Holospora elegans), endonuclear symbiotic bacteria of the ciliate Paramecium caudatum. FEMS Microbiol. Lett. 359, 16-18, doi:10.1111/1574-6968.12577 (2014).
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32. Kodama, Y., Suzuki, H., Dohra, H., Sugii, M., Kitazume, T., Yamaguchi, K., Shigenobu, S., and Fujishima, M. Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts. BMC Genomics 15, 183, doi:10.1186/1471-2164-15-183 (2014).
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   2013年度

33. Dohra, H., Suzuki, H., Suzuki, T., Tanaka, K., and Fujishima, M. Draft Genome Sequence of Holospora undulata Strain HU1, a Micronucleus-Specific Symbiont of the Ciliate Paramecium caudatum. Genome Announc. 1, doi:10.1128/genomeA.00664-13 (2013).
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34. Suzuki, T., Igarashi, K., Dohra, H., Someya, T., Takano, T., Harada, K., Omae, S., Hirai, H., Yano, K., and Kawagishi, H. A new omics data resource of Pleurocybella porrigens for gene discovery. PLoS One 8, e69681, doi:10.1371/journal.pone.0069681 (2013).
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国立大学法人 静岡大学
遺伝子実験棟
Gene Research laboratory of Shizuoka University

〒422-8529
静岡県静岡市駿河区大谷836
836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan

TEL 054-238-4926
FAX 054-238-4926